HPC/Sharing Files: Difference between revisions

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When you collaborate with other users on a common project on Carbon, you may wish to share files among you.  There are several ways to achieve this, largely distinguished by how often and for how long sharing is needed.
When you collaborate with other users on a common project on Carbon, you may wish to share files among you.  There are several ways to achieve this, largely distinguished by how often and for how long sharing is needed.


== Sharging within a project group ==
== Sharing within a project group ==
This way of sharing files is suitable for ongoing interactions between users.
This way of sharing files is suitable for ongoing interactions between users.



Revision as of 20:24, December 5, 2012

Introduction

When you collaborate with other users on a common project on Carbon, you may wish to share files among you. There are several ways to achieve this, largely distinguished by how often and for how long sharing is needed.

Sharing within a project group

This way of sharing files is suitable for ongoing interactions between users.

Request a project group and directory by mail and send the following information:

  1. a group name which should be short (up to some 8 chars), descriptive, and distinctive.
  2. the user list (later changes are easy).
  • A new group will be created and users will be made members of that group. To pick up such a change, log out and back in.
  • A group directory will be created and can be accessed by one of the following names:
/home/share/groupname
~groupname
  • This directory will be mutually readable and writable among group members, and will not be accessible by other users.
  • The group will usually be inherited by all files and directories created there.

Sharing within proposals

Typically, a project group and associated sharing directory are created automatically for each CNM proposal that has more than one user. Access those directories under one of the following names:

/home/share/cnm12345
~cnm12345

Giving write permission

Carbon's /home/share directories are configured such that users of a group can read and write files and directories. However, when you move existing directories and files from somewhere else into the shared directory they may not be writeable for the group.

  • To make files writeable by group members:
chmod g+w file ...
  • To make a directory and all files thereunder (-R) group-writeable, which includes the ability to delete files:
chmod -R g+w dirname

Lean more about chmod, chown, and chgrp.

Sharing in your own directories

You can give access to some of your directories in your respective $HOME or $SANDBOX by opening permissions.

  • This option is typically useful for one-way sharing.
  • For bidirectional sharing, you will need to grant world-write permissions, which is not recommended for files in your own directory space.
  • You will likely need to repeatedly open permissions (chmod) for additional files that are placed there.

You as the owner can arrange this on your own as follows:

chmod a+x $HOME/
mkdir $HOME/share
# populate ..
chmod -R a+rX $HOME/share
This will yield read ("r") and execute ("X") permissions for all users ("a"), meaning users can browse directories, and read and execute already executable files there.
You may have to repeat the last step after you add files in the shared directory.

Direct your fellow users as follows:

cd /home/owner/share
ls
cp -p ....

If you have particularly large files, replace $HOME and /home by $SANDBOX and /sandbox, respectively.

Using a /tmp directory

You can drop files into the general-use /tmp directory of a login node and set permissions as needed. This way of sharing is:

  • suitable for one-off exchanges,
  • typically fairly loose with permissions,
  • resides on only one host,
  • world-write is not recommended,
  • likely to need chmod whenever more files are placed.

To share files under /tmp, do the following:

mkdir /tmp/foo
# populate ..
chmod -R a+rX /tmp/foo